public class EMSCParametersAbstract extends java.lang.Object implements EMSCParameters
Constructor and Description |
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EMSCParametersAbstract(boolean debug,
boolean computeStochasticTraceAlignments) |
Modifier and Type | Method and Description |
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DistanceMatrix |
getDistanceMatrix() |
boolean |
isComputeStochasticTraceAlignments() |
boolean |
isDebug() |
void |
setComputeStochasticTraceAlignments(boolean computeStochasticTraceAlignments)
If the stochastic trace alignments are not necessary (i.e.
|
void |
setDebug(boolean debug) |
void |
setDistanceMatrix(DistanceMatrix distanceMatrix) |
public EMSCParametersAbstract(boolean debug, boolean computeStochasticTraceAlignments)
public DistanceMatrix getDistanceMatrix()
getDistanceMatrix
in interface EMSCParameters
public void setDistanceMatrix(DistanceMatrix distanceMatrix)
public boolean isDebug()
isDebug
in interface EMSCParameters
public void setDebug(boolean debug)
public boolean isComputeStochasticTraceAlignments()
isComputeStochasticTraceAlignments
in interface EMSCParameters
public void setComputeStochasticTraceAlignments(boolean computeStochasticTraceAlignments)
computeStochasticTraceAlignments
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