Modifier and Type | Method and Description |
---|---|
Alignment |
DisplayProperties.getAlignment() |
Modifier and Type | Method and Description |
---|---|
void |
DisplayProperties.alignmentNameChanged(Alignment alignment) |
void |
DisplayProperties.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
DisplayProperties.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
DisplayProperties.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
Constructor and Description |
---|
AlignmentSorter(Alignment alignment,
java.util.Comparator<Sequence> comparator) |
DisplayProperties(Alignment alignment,
java.awt.Font font,
java.awt.FontMetrics fontMetrics,
boolean fastRender,
boolean renderGaps) |
Modifier and Type | Method and Description |
---|---|
void |
AlignmentListener.alignmentNameChanged(Alignment alignment) |
void |
AlignmentListener.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
AlignmentListener.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
AlignmentListener.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
Modifier and Type | Field and Description |
---|---|
protected Alignment |
AlignmentPanel.alignment |
Modifier and Type | Method and Description |
---|---|
void |
AlignmentFrame.alignmentNameChanged(Alignment alignment) |
void |
AlignmentNamePanel.alignmentNameChanged(Alignment alignment) |
void |
AlignmentPanel.alignmentNameChanged(Alignment alignment) |
void |
RulerAnnotationComponent.alignmentNameChanged(Alignment alignment) |
void |
RulerComponent.alignmentNameChanged(Alignment alignment) |
void |
AlignmentFrame.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
AlignmentNamePanel.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
AlignmentPanel.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
RulerAnnotationComponent.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
RulerComponent.alignmentSeqActivityChanged(Alignment alignment,
Sequence sequence) |
void |
AlignmentFrame.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
AlignmentNamePanel.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
AlignmentPanel.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
RulerAnnotationComponent.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
RulerComponent.alignmentSeqDeleted(Alignment alignment,
int i,
Sequence sequence) |
void |
AlignmentFrame.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
void |
AlignmentNamePanel.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
void |
AlignmentPanel.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
void |
RulerAnnotationComponent.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
void |
RulerComponent.alignmentSeqSwapped(Alignment alignment,
int i,
int j) |
Constructor and Description |
---|
AlignmentPanel(AlignmentFrame owner,
Alignment alignment,
DisplayProperties displayProperties) |
EditSequenceDialog(AlignmentFrame owner,
Sequence s,
Alignment alignment,
int mouseRowIndex)
Allows user to create and edit a NEW sequence
|