public class ConsensusSequence extends Sequence
Modifier | Constructor and Description |
---|---|
|
ConsensusSequence(AlignmentFrame owner,
DisplayProperties displayProperties) |
protected |
ConsensusSequence(AlignmentFrame owner,
DisplayProperties displayProperties,
Sequence[] seqs) |
Modifier and Type | Method and Description |
---|---|
double[] |
getInformationInColumnGapsExcluded() |
double[] |
getInformationInColumnGapsIncluded() |
double |
log2(double x) |
void |
recalc() |
addListener, deleteActivity, getActivityIndex, getActivityIndexArray, getDuplicateTraceNameList, getEncodedActivity, getLengthWithGaps, getLengthWithoutGaps, getName, getNoDuplicates, getSequenceNameColor, getSequenceWithGaps, getSequenceWithoutGaps, getSequenceWithoutGapsString, getSortValue, initialize, removeListener, setActivity, setName, setSequenceNameColor, setSortValue, shiftActivity, toString
public ConsensusSequence(AlignmentFrame owner, DisplayProperties displayProperties)
protected ConsensusSequence(AlignmentFrame owner, DisplayProperties displayProperties, Sequence[] seqs)