public class ConsensusComponent extends javax.swing.JPanel implements SequenceListener, DisplayPropertiesListener
javax.swing.JPanel.AccessibleJPanel
javax.swing.JComponent.AccessibleJComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Constructor and Description |
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ConsensusComponent(ConsensusSequence consensus,
DisplayProperties displayProperties) |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
public ConsensusComponent(ConsensusSequence consensus, DisplayProperties displayProperties)
public void setConsensus(ConsensusSequence consensus)
public java.awt.Dimension getPreferredSize()
getPreferredSize
in class javax.swing.JComponent
public java.awt.Color getConsensusColorAt(int i)
public java.lang.String getToolTipText(java.awt.event.MouseEvent e)
getToolTipText
in class javax.swing.JComponent
public double getConservationScoreAtColumnIndex(int i)
public void paint(java.awt.Graphics g)
paint
in class javax.swing.JComponent
public void displayAnnViewChanged(DisplayProperties displayProperties, Sequence sequence, boolean show)
displayAnnViewChanged
in interface DisplayPropertiesListener
public void displaySeqSelectChanged(DisplayProperties displayProperties, Sequence sequence, boolean select)
displaySeqSelectChanged
in interface DisplayPropertiesListener
public void displayFontChanged(DisplayProperties displayProperties)
displayFontChanged
in interface DisplayPropertiesListener
public void displayRenderGapsChanged(DisplayProperties displayProperties)
displayRenderGapsChanged
in interface DisplayPropertiesListener
public void displayGroupEditingChanged(DisplayProperties displayProperties)
displayGroupEditingChanged
in interface DisplayPropertiesListener
public void displayOverwriteChanged(DisplayProperties displayProperties)
displayOverwriteChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties displayProperties, Sequence sequence)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties displayProperties, Sequence[] sequenceArray)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void activityBackgroundChanged(DisplayProperties displayProperties)
activityBackgroundChanged
in interface DisplayPropertiesListener
public void sequenceActivityChanged(Sequence sequence)
sequenceActivityChanged
in interface SequenceListener
public void sequenceNameColorChanged(java.awt.Color color)
sequenceNameColorChanged
in interface SequenceListener
public void sequenceAnnotationChanged(Sequence sequence)
sequenceAnnotationChanged
in interface SequenceListener
public void sequenceColorChanged(Sequence sequence)
sequenceColorChanged
in interface SequenceListener
public void sequenceColumnAnnotationsChanged(Sequence sequence, int column)
public void sequenceLineAnnotationsChanged(Sequence aaseq)
sequenceLineAnnotationsChanged
in interface SequenceListener
public void sequenceNameChanged(Sequence sequence, java.lang.String oldName) throws java.lang.Exception
sequenceNameChanged
in interface SequenceListener
java.lang.Exception