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Package Hierarchies:
org.processmining.plugins.tracealignmentwithguidetree
,
org.processmining.plugins.tracealignmentwithguidetree.datatypes
,
org.processmining.plugins.tracealignmentwithguidetree.enumtypes
,
org.processmining.plugins.tracealignmentwithguidetree.exceptions
,
org.processmining.plugins.tracealignmentwithguidetree.listeners
,
org.processmining.plugins.tracealignmentwithguidetree.msa
,
org.processmining.plugins.tracealignmentwithguidetree.settings
,
org.processmining.plugins.tracealignmentwithguidetree.swingx
,
org.processmining.plugins.tracealignmentwithguidetree.tree
,
org.processmining.plugins.tracealignmentwithguidetree.ui
,
org.processmining.plugins.tracealignmentwithguidetree.util
,
org.processmining.plugins.tracealignmentwithguidetree.visualization
Class Hierarchy
java.lang.Object
javax.swing.AbstractCellEditor (implements javax.swing.CellEditor, java.io.Serializable)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColorEditor
(implements java.awt.event.ActionListener, javax.swing.table.TableCellEditor)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ActivityCharEncodingTable
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
ActivityColorListener
)
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
Alignment
(implements java.util.Comparator<T>)
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
Alignment.RulerAnnotation
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
AlignmentSorter
org.processmining.plugins.tracealignmentwithguidetree.tree.
AlignmentTree
org.processmining.plugins.tracealignmentwithguidetree.tree.
AlignmentTreeNode
org.processmining.plugins.tracealignmentwithguidetree.visualization.
AlignmentTreeVisualization
org.processmining.plugins.tracealignmentwithguidetree.util.
ArrayMatrixFileIO
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
ColumnFilter
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
ColumnSort
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.JInternalFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
AlignmentFrame
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
ActivityColorListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
)
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColorRenderer
(implements javax.swing.table.TableCellRenderer)
javax.swing.JList<E> (implements javax.accessibility.Accessible, javax.swing.Scrollable)
org.processmining.plugins.tracealignmentwithguidetree.swingx.
JListX
(implements javax.swing.event.ListSelectionListener)
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
AlignmentNamePanel
(implements java.awt.event.ActionListener, org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, java.awt.event.MouseListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
AlignmentPanel
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, javax.swing.Scrollable)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColumnFilterComponent
(implements java.awt.event.ActionListener, java.awt.event.MouseListener, javax.swing.event.PopupMenuListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColumnSortComponent
(implements java.awt.event.ActionListener, java.awt.event.MouseListener, javax.swing.event.PopupMenuListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ConsensusComponent
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
SequenceListener
)
org.processmining.plugins.tracealignmentwithguidetree.ui.
myStep
org.processmining.plugins.tracealignmentwithguidetree.ui.
AlignmentAlgorithmConfigurationStep
org.processmining.plugins.tracealignmentwithguidetree.ui.
IntroductionStep
org.processmining.plugins.tracealignmentwithguidetree.ui.
RealignmentConfigurationStep
org.processmining.plugins.tracealignmentwithguidetree.ui.
ScoringMatricesConfigurationStep
org.processmining.plugins.tracealignmentwithguidetree.visualization.
RulerAnnotationComponent
(implements java.awt.event.ActionListener, org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
, java.awt.event.MouseListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
RulerComponent
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
SequenceComponent
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
SequenceListener
)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
SequenceNameComponent
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
SequenceListener
)
javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
javax.swing.JTextField (implements javax.swing.SwingConstants)
org.processmining.plugins.tracealignmentwithguidetree.swingx.
FixedWidthTextField
javax.swing.JViewport (implements javax.accessibility.Accessible)
org.processmining.plugins.tracealignmentwithguidetree.swingx.
ScrollableViewport
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColorSequenceDialog
(implements java.awt.event.ActionListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColumnFilterDialog
(implements java.awt.event.ActionListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
ColumnSortDialog
(implements java.awt.event.ActionListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
EditActivityAnnotationDialog
org.processmining.plugins.tracealignmentwithguidetree.visualization.
EditSeqAnnBaseDialog
(implements java.awt.event.ActionListener, javax.swing.event.CaretListener)
org.processmining.plugins.tracealignmentwithguidetree.visualization.
EditSequenceNameDialog
org.processmining.plugins.tracealignmentwithguidetree.visualization.
EditSequenceDialog
(implements java.awt.event.ActionListener)
javax.swing.DefaultBoundedRangeModel (implements javax.swing.BoundedRangeModel, java.io.Serializable)
org.processmining.plugins.tracealignmentwithguidetree.swingx.
LazyBoundedRangeModel
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
DisplayProperties
(implements org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
, org.processmining.plugins.tracealignmentwithguidetree.listeners.
SequenceListener
)
org.processmining.plugins.tracealignmentwithguidetree.util.
FileIO
org.processmining.plugins.tracealignmentwithguidetree.msa.
GuideTreeAlignment
org.processmining.plugins.tracealignmentwithguidetree.util.
IndelSubstitutionScore
org.processmining.plugins.tracealignmentwithguidetree.
MineAlignment
org.processmining.plugins.tracealignmentwithguidetree.msa.
MSA
org.processmining.plugins.tracealignmentwithguidetree.msa.
RefineAlignment
org.processmining.plugins.tracealignmentwithguidetree.swingx.
ScrollableGridLayout
(implements java.awt.LayoutManager2)
org.processmining.plugins.tracealignmentwithguidetree.msa.
SeqAlignment
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
Sequence
org.processmining.plugins.tracealignmentwithguidetree.datatypes.
ConsensusSequence
org.processmining.plugins.tracealignmentwithguidetree.msa.
SequenceAlignment
org.processmining.plugins.tracealignmentwithguidetree.msa.
SequenceAlignmentLeftIndel
org.processmining.plugins.tracealignmentwithguidetree.util.
Temp
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
org.processmining.plugins.tracealignmentwithguidetree.exceptions.
ActivityNotFoundException
org.processmining.plugins.tracealignmentwithguidetree.
TraceAlignmentWithGuideTreeInput
org.processmining.plugins.tracealignmentwithguidetree.
TraceAlignmentWithGuideTreePlugin
org.processmining.plugins.tracealignmentwithguidetree.ui.
TraceAlignmentWithGuideTreeUI
(implements org.processmining.plugins.tracealignmentwithguidetree.settings.
TraceAlignmentWithGuideTreeSettingsListener
)
org.processmining.plugins.tracealignmentwithguidetree.util.
UkkonenSuffixTree
org.processmining.plugins.tracealignmentwithguidetree.swingx.
Utils
org.processmining.plugins.tracealignmentwithguidetree.util.
Watch
Interface Hierarchy
org.processmining.plugins.tracealignmentwithguidetree.listeners.
ActivityColorListener
org.processmining.plugins.tracealignmentwithguidetree.listeners.
AlignmentListener
org.processmining.plugins.tracealignmentwithguidetree.listeners.
DisplayPropertiesListener
org.processmining.plugins.tracealignmentwithguidetree.listeners.
SequenceListener
org.processmining.plugins.tracealignmentwithguidetree.settings.
TraceAlignmentWithGuideTreeSettingsListener
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.processmining.plugins.tracealignmentwithguidetree.enumtypes.
AlignmentAlgorithm
org.processmining.plugins.tracealignmentwithguidetree.enumtypes.
AlignmentType
org.processmining.plugins.tracealignmentwithguidetree.enumtypes.
RealignmentStrategy
org.processmining.plugins.tracealignmentwithguidetree.enumtypes.
ScoringMatrix
org.processmining.plugins.tracealignmentwithguidetree.enumtypes.
TraceBack
org.processmining.plugins.tracealignmentwithguidetree.msa.
SeqAlignment.TraceBack
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