All Classes
ActivityOverFlowException
AgglomerativeHierarchicalClustering
AgglomerativeHierarchicalClustering.ClusterCriteria
AgglomerativeHierarchicalClustering.ClusterType
Alignment
Alignment.RulerAnnotation
AlignmentFrame
AlignmentFrameVisualization
AlignmentListener
AlignmentNamePanel
AlignmentPanel
AlignmentSorter
ArrayMatrixFileIO
ColorScheme
ColorSchemeListener
ColorSequenceDialog
ColumnAnnotationComponent
ColumnFilter
ColumnFilterComponent
ColumnFilterDialog
ColumnSort
ColumnSortComponent
ColumnSortDialog
ConsensusComponent
ConsensusSequence
ConsolePane
DisplayProperties
DisplayPropertiesListener
DocumentOutputStream
DocumentWriter
EditActivityAnnDialog
EditLineAnnDialog
EditSeqAnnBaseDialog
EditSeqAnnDialog
EditSequenceDialog
EditSequenceNameDialog
EncodeActivitySet
EncodeTraces
EncodingNotFoundException
EquivalenceClass
ErrorDialog
EuclideanDistance
EuclideanDistance.Normalization
FeatureExtraction
FeatureExtraction.FeatureType
FeatureMatrix
FeatureSelection
FeatureSelection.FilterType
FileIO
FixedWidthTextField
IndelSubstitutionMatrix
ItemSelectionDialog
JListX
LazyBoundedRangeModel
LineAnnotationListCellRenderer
LineAnnotationSelectionDialog
MSA
RulerAnnotationComponent
RulerComponent
ScrollableGridLayout
ScrollableViewport
Sequence
Sequence.ColumnAnnotation
Sequence.LineAnnotation
SequenceAlignment
SequenceAlignment.TraceBack
SequenceAnnComponent
SequenceComponent
SequenceListener
SequenceNameComponent
TraceAlignmentConnection
TraceAlignmentPlugin
TraceSimilarity
UkkonenSuffixTree
Utils
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