AlignmentNamePanel(AlignmentFrame owner,
Alignment alignment,
DisplayProperties props) |
AlignmentPanel(AlignmentFrame owner,
Alignment alignment,
DisplayProperties displayProperties) |
ColorSequenceDialog(AlignmentFrame owner,
Sequence sequence) |
ColumnFilter(AlignmentFrame alignmentFrame,
int op,
java.lang.String filterActivitiesString) |
ColumnFilter(AlignmentFrame alignmentFrame,
java.lang.String filterActivitiesString) |
ColumnFilterComponent(AlignmentFrame owner,
Alignment alignment,
DisplayProperties displayProperties,
AlignmentFrame alignmentFrame) |
ColumnFilterDialog(AlignmentFrame owner,
DisplayProperties props,
int column,
ColumnFilter prevVal,
java.awt.Point location) |
ColumnSort(AlignmentFrame alignmentFrame,
int op,
java.lang.String filterActivitiesString,
int priority) |
ColumnSort(AlignmentFrame alignmentFrame,
java.lang.String letter) |
ColumnSort(AlignmentFrame alignmentFrame,
java.lang.String letter,
int priority) |
ColumnSortComponent(java.awt.Frame owner,
Alignment alignment,
DisplayProperties displayProperties,
AlignmentFrame alignmentFrame) |
ColumnSortDialog(AlignmentFrame owner,
DisplayProperties displayProperties,
int column,
ColumnSort prevVal,
java.awt.Point location) |
ConsensusSequence(AlignmentFrame alignmentFrame,
DisplayProperties props) |
ConsensusSequence(AlignmentFrame alignmentFrame,
DisplayProperties displayProperties,
Sequence[] seqs) |
EditActivityAnnDialog(AlignmentFrame owner,
DisplayProperties props,
Alignment alignment,
Sequence s,
int index) |
EditSeqAnnBaseDialog(AlignmentFrame owner,
java.lang.String title,
DisplayProperties displayProperties,
Sequence sequence) |
EditSeqAnnDialog(AlignmentFrame owner,
DisplayProperties displayProperties,
Sequence sequence) |
EditSequenceDialog(AlignmentFrame owner,
Sequence s) |
EditSequenceDialog(AlignmentFrame owner,
Sequence s,
Alignment alignment,
int mouseRowIndex)
Allows user to create and edit a NEW sequence
|
EditSequenceNameDialog(AlignmentFrame owner,
DisplayProperties props,
Sequence s) |
RulerAnnotationComponent(Alignment alignment,
DisplayProperties displayProperties,
AlignmentFrame owner) |
SequenceAnnComponent(AlignmentFrame owner,
Sequence sequence,
DisplayProperties displayProperties) |
SequenceComponent(AlignmentFrame alignmentFrame,
Sequence sequence,
DisplayProperties displayProperties) |
SequenceNameComponent(AlignmentFrame owner,
Sequence sequence,
DisplayProperties props) |