-
fileSeparator
java.lang.String fileSeparator
-
outputDir
java.lang.String outputDir
-
delim
java.lang.String delim
-
context
org.processmining.contexts.uitopia.UIPluginContext context
-
log
org.deckfour.xes.model.XLog log
-
traceList
java.util.List<E> traceList
-
isLogEncoded
boolean isLogEncoded
-
previousFeatureExtractionTypeSet
java.util.Set<E> previousFeatureExtractionTypeSet
-
featureExtractionTypeSet
java.util.Set<E> featureExtractionTypeSet
-
prevMinFrequencyCountThreshold
int prevMinFrequencyCountThreshold
-
minFrequencyCountThreshold
int minFrequencyCountThreshold
-
prevMinInstanceCountPercentageThreshold
float prevMinInstanceCountPercentageThreshold
-
minInstanceCountPercentageThreshold
float minInstanceCountPercentageThreshold
-
encodingLength
int encodingLength
-
dash
java.lang.String dash
-
hasOutliers
boolean hasOutliers
-
originalSequenceFeatureSetMap
java.util.Map<K,V> originalSequenceFeatureSetMap
-
originalAlphabetFeatureSetMap
java.util.Map<K,V> originalAlphabetFeatureSetMap
-
sequenceFeatureCountMap
java.util.Map<K,V> sequenceFeatureCountMap
-
alphabetFeatureCountMap
java.util.Map<K,V> alphabetFeatureCountMap
-
unionFeatureSet
java.util.Set<E> unionFeatureSet
-
filteredFeatureSet
java.util.Set<E> filteredFeatureSet
-
filteredSequenceFeatureSet
java.util.Set<E> filteredSequenceFeatureSet
-
filteredAlphabetFeatureSet
java.util.Set<E> filteredAlphabetFeatureSet
-
isSequenceFeatureType
boolean isSequenceFeatureType
-
featureMatrix
int[][] featureMatrix
-
distanceMatrix
float[][] distanceMatrix
-
similarityMatrix
float[][] similarityMatrix
-
previousDistanceMetric
java.lang.String previousDistanceMetric
-
previousSimilarityMetric
java.lang.String previousSimilarityMetric
-
distanceMetric
java.lang.String distanceMetric
-
similarityMetric
java.lang.String similarityMetric
-
isPreviousDistanceSelected
boolean isPreviousDistanceSelected
-
isDistanceSelected
boolean isDistanceSelected
-
kGramSize
int kGramSize
-
deriveSubstitutionScore
boolean deriveSubstitutionScore
-
deriveIndelScore
boolean deriveIndelScore
-
isSubstitutionScoreDerived
boolean isSubstitutionScoreDerived
-
isIndelScoreDerived
boolean isIndelScoreDerived
-
substitutionScoreMap
java.util.Map<K,V> substitutionScoreMap
-
indelRightGivenLeftScoreMap
java.util.Map<K,V> indelRightGivenLeftScoreMap
-
prevNoClusters
int prevNoClusters
-
noClusters
int noClusters
-
incrementLikeSubstitutionScore
int incrementLikeSubstitutionScore
-
gapPenalty
int gapPenalty
-
scaleFactor
float scaleFactor
-
prevIncrementLikeSubstitutionScore
int prevIncrementLikeSubstitutionScore
-
prevGapPenalty
int prevGapPenalty
-
prevScaleFactor
float prevScaleFactor
-
encodedTraceList
java.util.List<E> encodedTraceList
-
uniqueEncodedTraceList
java.util.List<E> uniqueEncodedTraceList
-
encodedTraceIdenticalIndicesMap
java.util.Map<K,V> encodedTraceIdenticalIndicesMap
-
activityCharMap
java.util.Map<K,V> activityCharMap
-
charActivityMap
java.util.Map<K,V> charActivityMap
-
activityList
java.util.List<E> activityList
-
activityCharMapTable
javax.swing.JTable activityCharMapTable
-
encodedActivityColorMap
java.util.Map<K,V> encodedActivityColorMap
-
columnFiltering
boolean columnFiltering
-
columnSorting
boolean columnSorting
-
columnFilteringMenuItem
javax.swing.JCheckBoxMenuItem columnFilteringMenuItem
-
columnSortingMenuItem
javax.swing.JCheckBoxMenuItem columnSortingMenuItem
-
renderGapsMenuItem
javax.swing.JCheckBoxMenuItem renderGapsMenuItem
-
renderEncodedActivityMenuItem
javax.swing.JCheckBoxMenuItem renderEncodedActivityMenuItem
-
viewMenu
javax.swing.JMenu viewMenu
-
editMenu
javax.swing.JMenu editMenu
-
squareMenuItem
javax.swing.JCheckBoxMenuItem squareMenuItem
-
dotMenuItem
javax.swing.JCheckBoxMenuItem dotMenuItem
-
overallPanel
javax.swing.JPanel overallPanel
-
clusterAlignmentTabbedPane
javax.swing.JTabbedPane clusterAlignmentTabbedPane
-
clusterAlignmentTabbedPanePanel
javax.swing.JPanel clusterAlignmentTabbedPanePanel
-
parameterSettingsPanel
javax.swing.JPanel parameterSettingsPanel
-
preProcessingPanel
javax.swing.JPanel preProcessingPanel
-
featureExtractionPanel
javax.swing.JPanel featureExtractionPanel
-
featureSelectionPanel
javax.swing.JPanel featureSelectionPanel
-
substitutionIndelScorePanel
javax.swing.JPanel substitutionIndelScorePanel
-
distanceSimilarityPanel
javax.swing.JPanel distanceSimilarityPanel
-
clusteringPanel
javax.swing.JPanel clusteringPanel
-
alignmentParametersPanel
javax.swing.JPanel alignmentParametersPanel
-
computeAlignmentPanel
javax.swing.JPanel computeAlignmentPanel
-
sequenceFeaturePanel
javax.swing.JPanel sequenceFeaturePanel
-
alphabetFeaturePanel
javax.swing.JPanel alphabetFeaturePanel
-
kGramSizePanel
javax.swing.JPanel kGramSizePanel
-
kGramCheckBox
javax.swing.JCheckBox kGramCheckBox
-
maximalRepeatCheckBox
javax.swing.JCheckBox maximalRepeatCheckBox
-
nearSuperMaximalRepeatCheckBox
javax.swing.JCheckBox nearSuperMaximalRepeatCheckBox
-
superMaximalRepeatCheckBox
javax.swing.JCheckBox superMaximalRepeatCheckBox
-
individualEventCheckBox
javax.swing.JCheckBox individualEventCheckBox
-
maximalRepeatAlphabetCheckBox
javax.swing.JCheckBox maximalRepeatAlphabetCheckBox
-
nearSuperMaximalRepeatAlphabetCheckBox
javax.swing.JCheckBox nearSuperMaximalRepeatAlphabetCheckBox
-
superMaximalRepeatAlphabetCheckBox
javax.swing.JCheckBox superMaximalRepeatAlphabetCheckBox
-
alignmentList
java.util.List<E> alignmentList
-
displayPropertiesList
java.util.List<E> displayPropertiesList
-
clusterAlignmentPanel
javax.swing.JPanel[] clusterAlignmentPanel
-
leftPanel
javax.swing.JPanel[] leftPanel
-
topPanel
javax.swing.JPanel[] topPanel
-
bottomPanel
javax.swing.JPanel[] bottomPanel
-
clusterAlignmentPanelLayout
ScrollableGridLayout[] clusterAlignmentPanelLayout
-
alignmentViewPort
ScrollableViewport[] alignmentViewPort
-
leftViewPort
ScrollableViewport[] leftViewPort
-
bottomViewPort
ScrollableViewport[] bottomViewPort
-
analysisViewPort
ScrollableViewport[] analysisViewPort
-
topViewPort
ScrollableViewport[] topViewPort
-
bottomLeftViewPort
ScrollableViewport[] bottomLeftViewPort
-
analysisNameViewPort
ScrollableViewport[] analysisNameViewPort
-
alignmentHorizontalScrollBar
javax.swing.JScrollBar[] alignmentHorizontalScrollBar
-
alignmentVerticalScrollBar
javax.swing.JScrollBar[] alignmentVerticalScrollBar
-
displayProperties
DisplayProperties[] displayProperties
-
alignmentPanel
AlignmentPanel[] alignmentPanel
-
alignmentNamePanel
AlignmentNamePanel[] alignmentNamePanel
-
columnFilterComponent
ColumnFilterComponent[] columnFilterComponent
-
columnSortComponent
ColumnSortComponent[] columnSortComponent
-
consensusSequence
ConsensusSequence[] consensusSequence
-
consensusComponent
ConsensusComponent[] consensusComponent
-
MaxPriority
int MaxPriority
-
numColumnSorts
int numColumnSorts
-
columnSorts
java.util.Vector<E> columnSorts
-
msa
MSA msa
-
alignmentDependentMenuItemSet
java.util.Set<E> alignmentDependentMenuItemSet