public class ConsensusSequence extends Sequence
Sequence.ColumnAnnotation, Sequence.LineAnnotation
Modifier | Constructor and Description |
---|---|
|
ConsensusSequence(AlignmentFrame alignmentFrame,
DisplayProperties props) |
protected |
ConsensusSequence(AlignmentFrame alignmentFrame,
DisplayProperties displayProperties,
Sequence[] seqs) |
Modifier and Type | Method and Description |
---|---|
double[] |
getInformationInColumnGapsExcluded() |
double[] |
getInformationInColumnGapsIncluded() |
double |
log2(double x) |
void |
recalc() |
addDuplicateProcessInstance, addLineAnnotation, addLineAnnotation, addListener, deleteActivity, deleteAnnotation, deleteLineAnnotation, deleteLineAnnotation, getActivityIndex, getActivityIndexArray, getAnnotation, getColor, getColumnAnnotation, getColumnAnnotations, getColumnAnnotationsCount, getDisplayedAnnotation, getDisplayedAnnotationName, getDuplicateProcessInstanceNameList, getEncodedActivity, getLengthWithGaps, getLengthWithoutGaps, getLineAnnotation, getLineAnnotation, getLineAnnotations, getLineAnnotationsCount, getName, getNoDuplicates, getSequenceWithGaps, getSequenceWithoutGaps, getSequenceWithoutGapsString, getSortValue, getSymbol, initialize, removeListener, setActivity, setColor, setLineAnnotation, setName, setSortValue, shiftActivity, toString
public ConsensusSequence(AlignmentFrame alignmentFrame, DisplayProperties props)
protected ConsensusSequence(AlignmentFrame alignmentFrame, DisplayProperties displayProperties, Sequence[] seqs)