public class SequenceComponent extends javax.swing.JPanel implements DisplayPropertiesListener, SequenceListener, ColorSchemeListener
javax.swing.JPanel.AccessibleJPanel
javax.swing.JComponent.AccessibleJComponent
Modifier and Type | Field and Description |
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boolean |
collapsed |
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Constructor and Description |
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SequenceComponent(AlignmentFrame alignmentFrame,
Sequence sequence,
DisplayProperties displayProperties) |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
public SequenceComponent(AlignmentFrame alignmentFrame, Sequence sequence, DisplayProperties displayProperties)
public void setSequence(Sequence sequence)
public Sequence getSequence()
public java.awt.Dimension getMinimumSize()
getMinimumSize
in class javax.swing.JComponent
public java.awt.Dimension getMaximumSize()
getMaximumSize
in class javax.swing.JComponent
public java.awt.Dimension getPreferredSize()
getPreferredSize
in class javax.swing.JComponent
public java.awt.Dimension getSize()
getSize
in class java.awt.Component
public int findColumn(int x, int y)
x
- - the x-coordinate valuey
- - the y-coordinate valuepublic java.awt.Point getActivityPosition(int activityIndex)
activityIndex
- public DisplayProperties getDisplayProperties()
public void setCollapsed(boolean collapsed)
public boolean getCollapsed()
public void paintComponent(java.awt.Graphics g)
paintComponent
in class javax.swing.JComponent
public void displayAnnViewChanged(DisplayProperties dp, Sequence sequence, boolean show)
displayAnnViewChanged
in interface DisplayPropertiesListener
public void displayColorSchemeChanged(DisplayProperties dp, ColorScheme old)
displayColorSchemeChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties dp, Sequence sequence)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties dp, Sequence[] sequenceArray)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void displayFontChanged(DisplayProperties dp)
displayFontChanged
in interface DisplayPropertiesListener
public void displayRenderGapsChanged(DisplayProperties dp)
displayRenderGapsChanged
in interface DisplayPropertiesListener
public void activityBackgroundChanged(DisplayProperties dp)
activityBackgroundChanged
in interface DisplayPropertiesListener
public void displaySeqSelectChanged(DisplayProperties dp, Sequence sequence, boolean select)
displaySeqSelectChanged
in interface DisplayPropertiesListener
public void displayOverwriteChanged(DisplayProperties dp)
displayOverwriteChanged
in interface DisplayPropertiesListener
public void displayGroupEditingChanged(DisplayProperties dp)
displayGroupEditingChanged
in interface DisplayPropertiesListener
public void sequenceActivityChanged(Sequence sequence)
sequenceActivityChanged
in interface SequenceListener
public void sequenceColorChanged(Sequence sequence)
sequenceColorChanged
in interface SequenceListener
public void sequenceColumnAnnotationsChanged(Sequence sequence, int column)
sequenceColumnAnnotationsChanged
in interface SequenceListener
public void sequenceLineAnnotationsChanged(Sequence aaseq)
sequenceLineAnnotationsChanged
in interface SequenceListener
public void sequenceAnnotationChanged(Sequence sequence)
sequenceAnnotationChanged
in interface SequenceListener
public void sequenceNameChanged(Sequence sequence, java.lang.String oldName) throws java.lang.Exception
sequenceNameChanged
in interface SequenceListener
java.lang.Exception
public void colorSchemeChanged(ColorScheme cs)
colorSchemeChanged
in interface ColorSchemeListener