public class SequenceAnnComponent extends javax.swing.JPanel implements SequenceListener, DisplayPropertiesListener, java.awt.event.MouseListener
javax.swing.JPanel.AccessibleJPanel
javax.swing.JComponent.AccessibleJComponent
listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW
Constructor and Description |
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SequenceAnnComponent(AlignmentFrame owner,
Sequence sequence,
DisplayProperties displayProperties) |
getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI
addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, hide, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingOrigin, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update
add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle
public SequenceAnnComponent(AlignmentFrame owner, Sequence sequence, DisplayProperties displayProperties)
public void setSequence(Sequence sequence)
public void edit(java.awt.Point loc)
public Sequence getSequence()
public void setCollapsed(boolean collapsed)
public boolean getCollapsed()
public java.awt.Dimension getPreferredSize()
getPreferredSize
in class javax.swing.JComponent
public java.awt.Dimension getSize()
getSize
in class java.awt.Component
public void paint(java.awt.Graphics g)
paint
in class javax.swing.JComponent
public void sequenceAnnotationChanged(Sequence sequence)
sequenceAnnotationChanged
in interface SequenceListener
public void sequenceActivityChanged(Sequence aaseq)
sequenceActivityChanged
in interface SequenceListener
public void sequenceColorChanged(Sequence sequence)
sequenceColorChanged
in interface SequenceListener
public void sequenceColumnAnnotationsChanged(Sequence sequence, int column)
sequenceColumnAnnotationsChanged
in interface SequenceListener
public void sequenceLineAnnotationsChanged(Sequence aaseq)
sequenceLineAnnotationsChanged
in interface SequenceListener
public void sequenceNameChanged(Sequence sequence, java.lang.String oldName) throws java.lang.Exception
sequenceNameChanged
in interface SequenceListener
java.lang.Exception
public void displayAnnViewChanged(DisplayProperties dp, Sequence sequence, boolean show)
displayAnnViewChanged
in interface DisplayPropertiesListener
public void displayColorSchemeChanged(DisplayProperties dp, ColorScheme old)
displayColorSchemeChanged
in interface DisplayPropertiesListener
public void displayFontChanged(DisplayProperties dp)
displayFontChanged
in interface DisplayPropertiesListener
public void displayGroupEditingChanged(DisplayProperties dp)
displayGroupEditingChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties dp, Sequence sequence)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void displayHighlightsChanged(DisplayProperties dp, Sequence[] sequenceArray)
displayHighlightsChanged
in interface DisplayPropertiesListener
public void displayOverwriteChanged(DisplayProperties dp)
displayOverwriteChanged
in interface DisplayPropertiesListener
public void displayRenderGapsChanged(DisplayProperties dp)
displayRenderGapsChanged
in interface DisplayPropertiesListener
public void activityBackgroundChanged(DisplayProperties dp)
activityBackgroundChanged
in interface DisplayPropertiesListener
public void displaySeqSelectChanged(DisplayProperties dp, Sequence sequence, boolean select)
displaySeqSelectChanged
in interface DisplayPropertiesListener
public void mouseClicked(java.awt.event.MouseEvent arg0)
mouseClicked
in interface java.awt.event.MouseListener
public void mouseEntered(java.awt.event.MouseEvent arg0)
mouseEntered
in interface java.awt.event.MouseListener
public void mouseExited(java.awt.event.MouseEvent arg0)
mouseExited
in interface java.awt.event.MouseListener
public void mousePressed(java.awt.event.MouseEvent arg0)
mousePressed
in interface java.awt.event.MouseListener
public void mouseReleased(java.awt.event.MouseEvent arg0)
mouseReleased
in interface java.awt.event.MouseListener