public class MetricPatternAlphabetCount
extends java.lang.Object
Constructor and Description |
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MetricPatternAlphabetCount() |
Modifier and Type | Method and Description |
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java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedBasePatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedBasePatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedBasePatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedBasePatternAlphabetNonDuplicateInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedPatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedPatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedPatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getCombinedPatternAlphabetNonDuplicateInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingCombinedBasePatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingCombinedPatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingMaximalRepeatBasePatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingMaximalRepeatPatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingTandemArrayBasePatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> |
getContributingTandemArrayPatternAlphabetPatternSetMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatBasePatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatBasePatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatBasePatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatPatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatPatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatPatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getMaximalRepeatPatternAlphabetNonDuplicateInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayBasePatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayBasePatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayBasePatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayPatternAlphabetCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayPatternAlphabetInstanceCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayPatternAlphabetNonDuplicateCountMap() |
java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> |
getTandemArrayPatternAlphabetNonDuplicateInstanceCountMap() |
void |
printMetrics() |
void |
printMetricsLog() |
void |
setCombinedBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetCountMap) |
void |
setCombinedBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetInstanceCountMap) |
void |
setCombinedBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetNonDuplicateCountMap) |
void |
setCombinedBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetNonDuplicateInstanceCountMap) |
void |
setCombinedPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetCountMap) |
void |
setCombinedPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetInstanceCountMap) |
void |
setCombinedPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetNonDuplicateCountMap) |
void |
setCombinedPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetNonDuplicateInstanceCountMap) |
void |
setContributingCombinedBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingCombinedBasePatternAlphabetPatternSetMap) |
void |
setContributingCombinedPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingCombinedPatternAlphabetPatternSetMap) |
void |
setContributingMaximalRepeatBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingMaximalRepeatBasePatternAlphabetPatternSetMap) |
void |
setContributingMaximalRepeatPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingMaximalRepeatPatternAlphabetPatternSetMap) |
void |
setContributingTandemArrayBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingTandemArrayBasePatternAlphabetPatternSetMap) |
void |
setContributingTandemArrayPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingTandemArrayPatternAlphabetPatternSetMap) |
void |
setMaximalRepeatBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetCountMap) |
void |
setMaximalRepeatBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetInstanceCountMap) |
void |
setMaximalRepeatBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetNonDuplicateCountMap) |
void |
setMaximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap) |
void |
setMaximalRepeatPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetCountMap) |
void |
setMaximalRepeatPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetInstanceCountMap) |
void |
setMaximalRepeatPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetNonDuplicateCountMap) |
void |
setMaximalRepeatPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetNonDuplicateInstanceCountMap) |
void |
setTandemArrayBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetCountMap) |
void |
setTandemArrayBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetInstanceCountMap) |
void |
setTandemArrayBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetNonDuplicateCountMap) |
void |
setTandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap) |
void |
setTandemArrayPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetCountMap) |
void |
setTandemArrayPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetInstanceCountMap) |
void |
setTandemArrayPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetNonDuplicateCountMap) |
void |
setTandemArrayPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetNonDuplicateInstanceCountMap) |
public void setTandemArrayPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetCountMap)
public void setTandemArrayBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetCountMap)
public void setTandemArrayPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetInstanceCountMap)
public void setTandemArrayBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetInstanceCountMap)
public void setMaximalRepeatPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetCountMap)
public void setMaximalRepeatBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetCountMap)
public void setMaximalRepeatPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetInstanceCountMap)
public void setMaximalRepeatBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetInstanceCountMap)
public void setCombinedPatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetCountMap)
public void setCombinedBasePatternAlphabetCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetCountMap)
public void setCombinedPatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetInstanceCountMap)
public void setCombinedBasePatternAlphabetInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetInstanceCountMap)
public void setTandemArrayPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetNonDuplicateCountMap)
public void setTandemArrayBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetNonDuplicateCountMap)
public void setTandemArrayPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayPatternAlphabetNonDuplicateInstanceCountMap)
public void setTandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> tandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap)
public void setMaximalRepeatPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetNonDuplicateCountMap)
public void setMaximalRepeatBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetNonDuplicateCountMap)
public void setMaximalRepeatPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatPatternAlphabetNonDuplicateInstanceCountMap)
public void setMaximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> maximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap)
public void setCombinedPatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetNonDuplicateCountMap)
public void setCombinedBasePatternAlphabetNonDuplicateCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetNonDuplicateCountMap)
public void setCombinedPatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedPatternAlphabetNonDuplicateInstanceCountMap)
public void setCombinedBasePatternAlphabetNonDuplicateInstanceCountMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> combinedBasePatternAlphabetNonDuplicateInstanceCountMap)
public void setContributingTandemArrayPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingTandemArrayPatternAlphabetPatternSetMap)
public void setContributingTandemArrayBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingTandemArrayBasePatternAlphabetPatternSetMap)
public void setContributingMaximalRepeatPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingMaximalRepeatPatternAlphabetPatternSetMap)
public void setContributingMaximalRepeatBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingMaximalRepeatBasePatternAlphabetPatternSetMap)
public void setContributingCombinedPatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingCombinedPatternAlphabetPatternSetMap)
public void setContributingCombinedBasePatternAlphabetPatternSetMap(java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> contributingCombinedBasePatternAlphabetPatternSetMap)
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayPatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayBasePatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayPatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayBasePatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatPatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatBasePatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatPatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatBasePatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedPatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedBasePatternAlphabetCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedPatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedBasePatternAlphabetInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayPatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayBasePatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayPatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getTandemArrayBasePatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatPatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatBasePatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatPatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getMaximalRepeatBasePatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedPatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedBasePatternAlphabetNonDuplicateCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedPatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.lang.Integer> getCombinedBasePatternAlphabetNonDuplicateInstanceCountMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingTandemArrayPatternAlphabetPatternSetMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingTandemArrayBasePatternAlphabetPatternSetMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingMaximalRepeatPatternAlphabetPatternSetMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingMaximalRepeatBasePatternAlphabetPatternSetMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingCombinedPatternAlphabetPatternSetMap()
public java.util.Map<java.util.TreeSet<java.lang.String>,java.util.TreeSet<java.lang.String>> getContributingCombinedBasePatternAlphabetPatternSetMap()
public void printMetrics()
public void printMetricsLog()