public class FeatureMatrix
extends java.lang.Object
Constructor and Description |
---|
FeatureMatrix(int encodingLength,
java.util.List<java.lang.String> charStreamList,
java.util.Map<java.util.Set<java.lang.String>,java.util.Set<java.lang.String>> alphabetFeatureSetMap) |
FeatureMatrix(int encodingLength,
java.util.List<java.lang.String> charStreamList,
java.util.Set<java.lang.String> sequenceFeatureSet) |
FeatureMatrix(int encodingLength,
java.util.List<java.lang.String> charStreamList,
java.util.Set<java.lang.String> sequenceFeatureSet,
FilterType filterType)
Cater to feature matrix generation with consideration of non-overlaps
|
Modifier and Type | Method and Description |
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java.util.List<java.util.Set<java.lang.String>> |
getAlphabetFeatureList() |
int[][] |
getFeatureMatrix() |
java.util.List<java.lang.String> |
getSequenceFeatureList() |
public FeatureMatrix(int encodingLength, java.util.List<java.lang.String> charStreamList, java.util.Set<java.lang.String> sequenceFeatureSet)
public FeatureMatrix(int encodingLength, java.util.List<java.lang.String> charStreamList, java.util.Set<java.lang.String> sequenceFeatureSet, FilterType filterType)
encodingLength
- charStreamList
- sequenceFeatureSet
- public FeatureMatrix(int encodingLength, java.util.List<java.lang.String> charStreamList, java.util.Map<java.util.Set<java.lang.String>,java.util.Set<java.lang.String>> alphabetFeatureSetMap)